PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010864.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 654aa    MW: 71128.8 Da    PI: 6.9403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010864.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.33.4e-1042836532374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  ++ L+e+A+a+s+g+ e+a ++Lar+  +   +p+ ++ qRl  ++  AL++r++     + ++ p++e      +e+  + +l++e+sP++k+++++
  Pbr010864.1 283 KQSLMEAATAISEGKSEAAAEILARMMATqvPNPRPNSEQRLLEFLGLALKSRVNP----IDNSPPANELF---GQEHSGSIQLLYELSPCFKLGFMA 373
                  578**********************998854666779******************9....44433433333...9999******************** PP

         GRAS  98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  aN+aIlea+ ++    ++vH+iDfdi++G+Q++ L+qaL++R+   p+ ++iT+v++  +g + +l+ ++++L++ Ae+lgv++efnv v++++ +l+
  Pbr010864.1 374 ANSAILEATLTDqsatNKVHVIDFDIGHGGQYMLLFQALSTRQyVLPAVVKITTVAD--NGGEGRLRMVRQKLSQAAERLGVRLEFNV-VSQKIGELN 468
                  ********9777678899*************************555669********..77**************************9.7******** PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   ++L ++p+E +aVn++++l++++desvs++++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e++ yy al++s+ea++pre+  r+k E++
  Pbr010864.1 469 RDSLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQEMNTNTAPFMARVNECCAYYGALLESIEATVPRENPGRVKAEEA 566
                  ************************************************************************************************** PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   l+r++vn vaceg++r++r+e ++kWr+r+++aGF+  p++ ++++  k  l+  +  + g++v+ee+g +++gW +r+L+++SaWr
  Pbr010864.1 567 -LSRKLVNSVACEGRDRVQRCEVFGKWRARMGMAGFELRPMGPNMTELLKNRLESGNraNSGFTVKEENGGVCFGWISRTLTVASAWR 653
                  .************************************************9999987667899*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.682256631IPR005202Transcription factor GRAS
PfamPF035141.2E-101283653IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MQSGGFNGGG GGGGVPDFYT NGRSISISAA MNGHNPSQNN PYHRSQLPSM FMDPTASQIA  60
RQTQFQPQTQ NPAAGLIGKR TLAEFQAHQQ NHYNPHQNYH QNPGQNLYLR SLKPRTFQHS  120
SPISPLSPID FSSGSAITGS DSSSSSSSIL SHQRFGLPLL HQLRPQPINQ TAPPAMSYVN  180
NLVPNNPVQN NPVQTRGLDS EKKMISNTLQ ELEKQLLDDN DEDDEGDAVS VITKTNSEWS  240
ETIQNLMGSA APSQCQKPIS PSPTSSSSSS SSVASPASST CSKQSLMEAA TAISEGKSEA  300
AAEILARMMA TQVPNPRPNS EQRLLEFLGL ALKSRVNPID NSPPANELFG QEHSGSIQLL  360
YELSPCFKLG FMAANSAILE ATLTDQSATN KVHVIDFDIG HGGQYMLLFQ ALSTRQYVLP  420
AVVKITTVAD NGGEGRLRMV RQKLSQAAER LGVRLEFNVV SQKIGELNRD SLGCEPDEPI  480
AVNFAFKLYS MPDESVSTDN PRDELLRRVK GLAPRVVTLV EQEMNTNTAP FMARVNECCA  540
YYGALLESIE ATVPRENPGR VKAEEALSRK LVNSVACEGR DRVQRCEVFG KWRARMGMAG  600
FELRPMGPNM TELLKNRLES GNRANSGFTV KEENGGVCFG WISRTLTVAS AWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-402846536375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009368748.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-178SCL8_ARATH; Scarecrow-like protein 8
TrEMBLD9ZJB80.0D9ZJB8_MALDO; SCL domain class transcription factor
STRINGPOPTR_0004s07700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-160SCARECROW-like 8